feat(server): inference state-graph + supervisor, memory tools, MCP client, schema, routes

- Add state-graph.ts: typed state machine for inference lifecycle
- Add supervisor.ts: agent supervisor pattern for multi-agent coordination
- Add export-formatter.ts: structured export formatting
- Add manage_memory.ts: memory CRUD tool for agent persistence
- Add get_wiki_article.ts: codecontext wiki article retrieval
- Extend memory/index.ts: 3-tier memory (context/daily/core)
- Extend MCP client: mcp-config.ts env-var substitution
- Update schema.sql: agent_sessions, tasks, pending_changes extensions
- Update API types: MessageMetadata, ErrorReason, AgentSessionConfig
- Update routes: chats, messages, sessions — column renames and agent_session_id
- Update inference: error handler, payload builder, stream phase, turn orchestrator

apps/server/src/routes/sessions.ts

@@ -145,7 +145,7 @@ export function registerSessionRoutes(
       }
       const status = req.query.status === 'archived' ? 'archived' : 'open';
       const rows = await sql<Session[]>`
-        SELECT id, project_id, name, model, system_prompt, status, created_at, updated_at, agent_id, web_search_enabled, workspace_panes, allowed_read_paths
+        SELECT id, project_id, name, model, system_prompt, status, created_at, updated_at, agent_id, web_search_enabled, workspace_panes, allowed_read_paths, state_graph_enabled
         FROM sessions
         WHERE project_id = ${req.params.id} AND status = ${status}
         ORDER BY updated_at DESC
@@ -213,7 +213,7 @@ export function registerSessionRoutes(
 
   app.get<{ Params: { id: string } }>('/api/sessions/:id', async (req, reply) => {
     const rows = await sql<Session[]>`
-      SELECT id, project_id, name, model, system_prompt, status, created_at, updated_at, agent_id, web_search_enabled, workspace_panes, allowed_read_paths
+      SELECT id, project_id, name, model, system_prompt, status, created_at, updated_at, agent_id, web_search_enabled, workspace_panes, allowed_read_paths, state_graph_enabled
       FROM sessions WHERE id = ${req.params.id}
     `;
     if (rows.length === 0) {
@@ -349,10 +349,10 @@ export function registerSessionRoutes(
       const rows = await sql<Session[]>`
         UPDATE sessions
         SET workspace_panes = ${sql.json(envelope as never)},
-            updated_at = clock_timestamp()
+          updated_at = clock_timestamp()
         WHERE id = ${req.params.id}
         RETURNING id, project_id, name, model, system_prompt, status, created_at, updated_at,
-                  agent_id, web_search_enabled, workspace_panes, allowed_read_paths
+                  agent_id, web_search_enabled, workspace_panes, allowed_read_paths, state_graph_enabled
       `;
       if (rows.length === 0) {
         reply.code(404);