feat(server): inference state-graph + supervisor, memory tools, MCP client, schema, routes

- Add state-graph.ts: typed state machine for inference lifecycle
- Add supervisor.ts: agent supervisor pattern for multi-agent coordination
- Add export-formatter.ts: structured export formatting
- Add manage_memory.ts: memory CRUD tool for agent persistence
- Add get_wiki_article.ts: codecontext wiki article retrieval
- Extend memory/index.ts: 3-tier memory (context/daily/core)
- Extend MCP client: mcp-config.ts env-var substitution
- Update schema.sql: agent_sessions, tasks, pending_changes extensions
- Update API types: MessageMetadata, ErrorReason, AgentSessionConfig
- Update routes: chats, messages, sessions — column renames and agent_session_id
- Update inference: error handler, payload builder, stream phase, turn orchestrator

apps/server/src/services/mcp-client.ts

@@ -148,6 +148,19 @@ export function getServerPermission(prefixedToolName: string): McpPermission {
   return state?.permission ?? 'allow';
 }
 
+/** Override the permission for a server. Used by the approval flow. */
+export function setServerPermission(serverName: string, permission: McpPermission): void {
+  const state = servers.get(serverName);
+  if (state) {
+    state.permission = permission;
+  }
+}
+
+/** Get the server name from a prefixed tool name. Returns null if not an MCP tool. */
+export function getServerName(prefixedToolName: string): string | null {
+  return toolToServer.get(prefixedToolName) ?? null;
+}
+
 /** Return all wrapped ToolDefs from all connected servers, flattened. */
 export function getTools(): ToolDef<Record<string, unknown>>[] {
   const all: ToolDef<Record<string, unknown>>[] = [];