v2.0.0-beta: write tools, pending-changes queue, inference loop, API routes

Phase 2 of v2.0. BooCoder is now a functional write-capable chatbot.

Write-path guard: resolveWritePath() uses resolve() (no realpath — files may
not exist for creates) + prefix-check + secret-file deny list (.env, *.pem,
id_rsa*, etc.). 23 unit tests cover traversal attacks.

Pending-changes service: queueEdit/Create/Delete → applyOne/All →
rejectOne/All → rewindOne. Edit diffs stored as JSON {old, new}. All writes
queue before touching disk; apply re-validates the path guard.

5 write tools: edit_file, create_file, delete_file, apply_pending, rewind.
Registered alongside 25 read-only tools from BooChat (30 total, alpha-sorted).
Write tools use a module-level inference context for sql+sessionId injection.

Inference loop via workspace dependency: apps/coder imports
createInferenceRunner, createBroker, ALL_TOOLS from @boocode/server (dist/).
apps/server gains declaration: true + exports map with typed subpath entries.
No code duplication — one inference engine shared by both apps.

API routes: POST /api/sessions/:id/messages (user msg → inference), POST stop,
GET/POST pending-changes CRUD (5 endpoints), WebSocket session streaming.

Dockerfile updated to build apps/server first (coder depends on its .d.ts).
Health endpoint reports tool count: {"ok":true,"db":true,"tools":30}.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>

pnpm-lock.yaml

@@ -48,6 +48,9 @@ importers:
 
   apps/coder:
     dependencies:
+      '@boocode/server':
+        specifier: workspace:*
+        version: link:../server
       '@fastify/static':
         specifier: ^7.0.4
         version: 7.0.4
@@ -73,6 +76,9 @@ importers:
       typescript:
         specifier: ^5.5.0
         version: 5.9.3
+      vitest:
+        specifier: ^3.0.0
+        version: 3.2.4(@types/debug@4.1.13)(@types/node@20.19.41)(lightningcss@1.32.0)(msw@2.14.6(@types/node@20.19.41)(typescript@5.9.3))
 
   apps/server:
     dependencies: